STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB14837.1PFAM: HTH DNA binding domain. (213 aa)    
Predicted Functional Partners:
AGB17219.1
PFAM: HTH DNA binding domain.
  
     0.665
AGB17447.1
Hypothetical protein.
  
     0.641
AGB16318.1
PFAM: Protein of unknown function (DUF447).
  
     0.624
AGB14838.1
Putative RND superfamily exporter; PFAM: MMPL family; TIGRFAM: The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family.
 
     0.593
AGB15495.1
PFAM: Protein of unknown function (DUF2797).
  
     0.591
AGB17709.1
Leader peptidase family protein; PFAM: Archaeal Peptidase A24 C-terminus Type II; Type IV leader peptidase family.
  
     0.591
AGB14879.1
Putative membrane protein; PFAM: Protein of unknown function (DUF1616).
  
     0.583
AGB17495.1
PFAM: Sugar-specific transcriptional regulator TrmB.
  
     0.563
AGB15911.1
Archaeal flagella assembly protein J; PFAM: Bacterial type II secretion system protein F domain.
  
     0.552
AGB15253.1
Putative membrane protein; PFAM: Protein of unknown function (DUF1616).
  
     0.544
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.