Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AGB14855.1Integral membrane protein CcmA involved in cell shape determination; PFAM: Protein of unknown function, DUF583. (369 aa)    
Predicted Functional Partners:
AGB14691.1
Sulfur transfer protein involved in thiamine biosynthesis.
       0.605
rfcS
DNA polymerase III, gamma/tau subunit; Part of the RFC clamp loader complex which loads the PCNA sliding clamp onto DNA; Belongs to the activator 1 small subunits family. RfcS subfamily.
       0.596
AGB14856.1
Hypothetical protein.
 
     0.577
AGB14854.1
Hypothetical protein.
       0.511
AGB14690.1
PFAM: Acetyltransferase (GNAT) family.
       0.488
AGB14857.1
Orc1/cdc6 family replication initiation protein; Involved in regulation of DNA replication.
 
     0.422
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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