| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AGB14918.1 | AGB14919.1 | Halru_0272 | Halru_0273 | Xaa-Pro aminopeptidase. | DNA/RNA helicase, superfamily I; PFAM: UvrD/REP helicase. | 0.914 |
| AGB14919.1 | AGB14918.1 | Halru_0273 | Halru_0272 | DNA/RNA helicase, superfamily I; PFAM: UvrD/REP helicase. | Xaa-Pro aminopeptidase. | 0.914 |
| AGB14919.1 | AGB17339.1 | Halru_0273 | Halru_2764 | DNA/RNA helicase, superfamily I; PFAM: UvrD/REP helicase. | DEAD_2 domain-containing protein; PFAM: DEAD_2. | 0.784 |
| AGB14919.1 | AGB17678.1 | Halru_0273 | Halru_3112 | DNA/RNA helicase, superfamily I; PFAM: UvrD/REP helicase. | PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; Helix-hairpin-helix motif. | 0.825 |
| AGB14919.1 | fen | Halru_0273 | Halru_0771 | DNA/RNA helicase, superfamily I; PFAM: UvrD/REP helicase. | Flap structure-specific endonuclease; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. Binds the unpaired 3'-DNA end and kinks the DNA to facilitate 5' cleavage specificity. Cleaves one nucleotide into the double-stranded DNA from the junction in flap DNA, leaving a nick for ligation. Also involved in the base excision repair [...] | 0.818 |
| AGB14919.1 | mutL | Halru_0273 | Halru_0504 | DNA/RNA helicase, superfamily I; PFAM: UvrD/REP helicase. | DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.867 |
| AGB14919.1 | rad50 | Halru_0273 | Halru_1174 | DNA/RNA helicase, superfamily I; PFAM: UvrD/REP helicase. | ATPase involved in DNA repair; Part of the Rad50/Mre11 complex, which is involved in the early steps of DNA double-strand break (DSB) repair. Rad50 controls the balance between DNA end bridging and DNA resection via ATP-dependent structural rearrangements of the Rad50/Mre11 complex. Belongs to the SMC family. RAD50 subfamily. | 0.813 |
| AGB14919.1 | radA | Halru_0273 | Halru_2758 | DNA/RNA helicase, superfamily I; PFAM: UvrD/REP helicase. | DNA repair and recombination protein RadA; Involved in DNA repair and in homologous recombination. Binds and assemble on single-stranded DNA to form a nucleoprotein filament. Hydrolyzes ATP in a ssDNA-dependent manner and promotes DNA strand exchange between homologous DNA molecules. | 0.851 |
| AGB14919.1 | topA | Halru_0273 | Halru_1101 | DNA/RNA helicase, superfamily I; PFAM: UvrD/REP helicase. | Topoisomerase IA; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA superco [...] | 0.799 |
| AGB14919.1 | uvrA | Halru_0273 | Halru_2442 | DNA/RNA helicase, superfamily I; PFAM: UvrD/REP helicase. | Excinuclease ABC, A subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. | 0.800 |
| AGB14919.1 | uvrC | Halru_0273 | Halru_0197 | DNA/RNA helicase, superfamily I; PFAM: UvrD/REP helicase. | Excinuclease ABC, C subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.828 |
| AGB17339.1 | AGB14919.1 | Halru_2764 | Halru_0273 | DEAD_2 domain-containing protein; PFAM: DEAD_2. | DNA/RNA helicase, superfamily I; PFAM: UvrD/REP helicase. | 0.784 |
| AGB17339.1 | fen | Halru_2764 | Halru_0771 | DEAD_2 domain-containing protein; PFAM: DEAD_2. | Flap structure-specific endonuclease; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. Binds the unpaired 3'-DNA end and kinks the DNA to facilitate 5' cleavage specificity. Cleaves one nucleotide into the double-stranded DNA from the junction in flap DNA, leaving a nick for ligation. Also involved in the base excision repair [...] | 0.772 |
| AGB17339.1 | mutL | Halru_2764 | Halru_0504 | DEAD_2 domain-containing protein; PFAM: DEAD_2. | DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.425 |
| AGB17339.1 | rad50 | Halru_2764 | Halru_1174 | DEAD_2 domain-containing protein; PFAM: DEAD_2. | ATPase involved in DNA repair; Part of the Rad50/Mre11 complex, which is involved in the early steps of DNA double-strand break (DSB) repair. Rad50 controls the balance between DNA end bridging and DNA resection via ATP-dependent structural rearrangements of the Rad50/Mre11 complex. Belongs to the SMC family. RAD50 subfamily. | 0.619 |
| AGB17339.1 | radA | Halru_2764 | Halru_2758 | DEAD_2 domain-containing protein; PFAM: DEAD_2. | DNA repair and recombination protein RadA; Involved in DNA repair and in homologous recombination. Binds and assemble on single-stranded DNA to form a nucleoprotein filament. Hydrolyzes ATP in a ssDNA-dependent manner and promotes DNA strand exchange between homologous DNA molecules. | 0.430 |
| AGB17339.1 | topA | Halru_2764 | Halru_1101 | DEAD_2 domain-containing protein; PFAM: DEAD_2. | Topoisomerase IA; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA superco [...] | 0.530 |
| AGB17678.1 | AGB14919.1 | Halru_3112 | Halru_0273 | PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; Helix-hairpin-helix motif. | DNA/RNA helicase, superfamily I; PFAM: UvrD/REP helicase. | 0.825 |
| AGB17678.1 | fen | Halru_3112 | Halru_0771 | PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; Helix-hairpin-helix motif. | Flap structure-specific endonuclease; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. Binds the unpaired 3'-DNA end and kinks the DNA to facilitate 5' cleavage specificity. Cleaves one nucleotide into the double-stranded DNA from the junction in flap DNA, leaving a nick for ligation. Also involved in the base excision repair [...] | 0.720 |
| AGB17678.1 | radA | Halru_3112 | Halru_2758 | PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; Helix-hairpin-helix motif. | DNA repair and recombination protein RadA; Involved in DNA repair and in homologous recombination. Binds and assemble on single-stranded DNA to form a nucleoprotein filament. Hydrolyzes ATP in a ssDNA-dependent manner and promotes DNA strand exchange between homologous DNA molecules. | 0.796 |