STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB14927.1Hypothetical protein. (353 aa)    
Predicted Functional Partners:
secE
Protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
  
     0.732
AGB16364.1
Hypothetical protein.
  
     0.699
rpl39e
PFAM: Ribosomal L39 protein; Belongs to the eukaryotic ribosomal protein eL39 family.
  
     0.691
AGB14661.1
PFAM: Zn-ribbon containing protein (DUF2072).
  
     0.682
AGB16003.1
Putative Zn-ribbon RNA-binding protein with a function in translation; PFAM: Domain of unknown function (DUF1610).
  
     0.677
AGB15370.1
Putative membrane protein; PFAM: Transmembrane exosortase (Exosortase_EpsH).
  
     0.668
AGB14742.1
Hypothetical protein; PFAM: PRC-barrel domain.
  
     0.665
AGB14657.1
PFAM: Peptidase S24-like.
  
     0.654
AGB15118.1
PFAM: Protein of unknown function (DUF552).
  
     0.653
AGB15376.1
PFAM: Trm112p-like protein.
  
     0.641
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.