Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AGB15002.1PFAM: Protein of unknown function DUF54; Belongs to the UPF0201 family. (145 aa)    
Predicted Functional Partners:
AGB15003.1
PFAM: Adenylate kinase.
  
    0.919
AGB16079.1
Putative exosome subunit; PFAM: Protein of unknown function DUF54.
  
     0.728
AGB17169.1
Pyruvate formate-lyase activating-like enzyme.
  
     0.598
AGB17495.1
PFAM: Sugar-specific transcriptional regulator TrmB.
  
     0.570
AGB17337.1
NMD protein affecting ribosome stability and mRNA decay; PFAM: NMD3 family.
  
     0.569
rpl29
PFAM: Ribosomal L29 protein; TIGRFAM: ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.
 
     0.551
AGB16689.1
PFAM: Uncharacterized protein conserved in archaea (DUF2240).
  
     0.543
AGB14837.1
PFAM: HTH DNA binding domain.
  
     0.542
AGB16180.1
Single-stranded DNA-binding protein.
  
     0.534
endA
tRNA intron endonuclease; Endonuclease that removes tRNA introns. Cleaves pre-tRNA at the 5' and 3' splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3' cyclic phosphate and 5'-OH termini. Recognizes a pseudosymmetric substrate in which 2 bulged loops of 3 bases are separated by a stem of 4 bp.
 
     0.532
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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