STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB15018.1PFAM: ABC transporter; Branched-chain amino acid ATP-binding cassette transporter. (251 aa)    
Predicted Functional Partners:
AGB15017.1
PFAM: Branched-chain amino acid transport system / permease component.
  
 0.974
AGB15016.1
PFAM: Branched-chain amino acid transport system / permease component.
 
  
 0.970
AGB17418.1
PFAM: Branched-chain amino acid transport system / permease component.
  
 0.954
AGB15015.1
ABC-type branched-chain amino acid transport system, periplasmic component; PFAM: Receptor family ligand binding region.
 
  
 0.940
AGB17015.1
PFAM: Branched-chain amino acid transport system / permease component.
  
 0.937
AGB16464.1
PFAM: Branched-chain amino acid transport system / permease component.
  
 0.883
AGB16465.1
PFAM: Branched-chain amino acid transport system / permease component.
 
  
 0.877
AGB16461.1
ABC-type branched-chain amino acid transport system, periplasmic component; PFAM: Receptor family ligand binding region.
 
  
 0.840
AGB16462.1
ABC-type branched-chain amino acid transport systems, ATPase component; PFAM: ABC transporter.
 
  
0.838
AGB17175.1
ABC-type branched-chain amino acid transport system, periplasmic component; PFAM: Receptor family ligand binding region.
 
  
 0.812
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.