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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB15024.1Ca2+/Na+ antiporter; PFAM: Sodium/calcium exchanger protein. (438 aa)    
Predicted Functional Partners:
AGB15023.1
Hypothetical protein; PFAM: Domain of unknown function (DUF1508).
 
     0.573
AGB17246.1
Hypothetical protein.
  
     0.550
AGB15025.1
PFAM: Aldehyde dehydrogenase family.
       0.509
dtdA
Hypothetical protein; D-aminoacyl-tRNA deacylase with broad substrate specificity. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo.
 
    0.493
AGB15104.1
Membrane-associated phospholipid phosphatase; PFAM: PAP2 superfamily.
 
 
 0.476
AGB16318.1
PFAM: Protein of unknown function (DUF447).
  
     0.467
AGB15026.1
PFAM: E1-E2 ATPase; Heavy-metal-associated domain; haloacid dehalogenase-like hydrolase; TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC.
 
  
 0.460
AGB17244.1
PFAM: Reversibly glycosylated polypeptide.
  
     0.460
AGB14837.1
PFAM: HTH DNA binding domain.
  
     0.426
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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