Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AGB15062.1PFAM: Metallo-beta-lactamase superfamily. (274 aa)    
Predicted Functional Partners:
AGB15061.1
PFAM: ATPase family associated with various cellular activities (AAA); Belongs to the AAA ATPase family.
 
     0.842
rnz
Ribonuclease Z; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family.
     
 0.527
AGB16477.1
Flavin-dependent dehydrogenase; PFAM: FAD binding domain.
   
  
 0.469
AGB15143.1
Mismatch repair ATPase (MutS family); This protein is involved in the repair of mismatches in DNA.
 
    0.448
AGB16480.1
Putative acyltransferase; PFAM: Protein of unknown function, DUF583.
  
     0.435
AGB15080.1
Putative Fe-S oxidoreductase; PFAM: Radical SAM superfamily.
  
  
 0.425
AGB17557.1
PFAM: Radical SAM superfamily; TIGRFAM: radical SAM additional 4Fe4S-binding domain; radical SAM protein, BA_1875 family.
  
  
 0.425
AGB15747.1
Hypothetical protein.
  
     0.420
AGB15063.1
PFAM: Peptidase family M3.
       0.417
AGB16292.1
PFAM: Uncharacterized protein conserved in archaea (DUF2150).
  
     0.411
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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