Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AGB15076.1Hypothetical protein. (151 aa)    
Predicted Functional Partners:
AGB17215.1
DNA/RNA helicase, superfamily II; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase.
 
     0.839
AGB14764.1
Putative subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain.
  
     0.695
AGB16777.1
Putative transcriptional regulator; PFAM: Bacterial regulatory protein, arsR family.
  
     0.681
AGB15440.1
RecJ-like exonuclease with DnaJ-type Zn-finger domain; PFAM: DHH family; OB-fold nucleic acid binding domain.
  
     0.671
AGB16292.1
PFAM: Uncharacterized protein conserved in archaea (DUF2150).
 
     0.625
AGB16589.1
RecJ-like exonuclease with DnaJ-type Zn-finger domain; PFAM: S1 RNA binding domain; OB-fold nucleic acid binding domain.
  
     0.617
AGB16520.1
PFAM: MutS domain V.
  
     0.593
AGB15265.1
Putative membrane protein; PFAM: Protein of unknown function (DUF1616).
  
     0.563
AGB15354.1
Putative transcriptional regulator; PFAM: Bacterial regulatory protein, arsR family; Sugar-specific transcriptional regulator TrmB.
  
     0.563
AGB15253.1
Putative membrane protein; PFAM: Protein of unknown function (DUF1616).
  
     0.562
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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