Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AGB15094.1Choline dehydrogenase-like flavoprotein; PFAM: GMC oxidoreductase. (587 aa)    
Predicted Functional Partners:
AGB15093.1
Hypothetical protein.
 
  
  0.994
AGB16453.1
Enolase superfamily enzyme related to L-alanine-DL-glutamate epimerase; PFAM: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; Mandelate racemase / muconate lactonizing enzyme, N-terminal domain.
 
  
 0.923
AGB14706.1
Ankyrin repeat-containing protein; PFAM: Ankyrin repeat.
    
 0.851
AGB14805.1
TPR repeat-containing protein; PFAM: Tetratricopeptide repeat.
   
 0.616
AGB14956.1
Hypothetical protein.
    
 0.542
AGB14987.1
PFAM: Tetratricopeptide repeat.
    
 0.542
AGB15410.1
Hypothetical protein.
    
 0.542
AGB17007.1
PFAM: Tetratricopeptide repeat.
    
 0.542
AGB16621.1
PFAM: Permease family.
 
 
 0.465
AGB15219.1
PFAM: BCCT family transporter; TIGRFAM: choline/carnitine/betaine transport.
  
  
 0.427
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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