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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB15094.1Choline dehydrogenase-like flavoprotein; PFAM: GMC oxidoreductase. (587 aa)    
Predicted Functional Partners:
AGB15093.1
Hypothetical protein.
 
  
  0.994
AGB16453.1
Enolase superfamily enzyme related to L-alanine-DL-glutamate epimerase; PFAM: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; Mandelate racemase / muconate lactonizing enzyme, N-terminal domain.
 
  
  0.920
AGB14706.1
Ankyrin repeat-containing protein; PFAM: Ankyrin repeat.
    
 0.841
AGB14805.1
TPR repeat-containing protein; PFAM: Tetratricopeptide repeat.
  
 0.647
AGB14956.1
Hypothetical protein.
    
 0.559
AGB14987.1
PFAM: Tetratricopeptide repeat.
    
 0.559
AGB15410.1
Hypothetical protein.
    
 0.559
AGB17007.1
PFAM: Tetratricopeptide repeat.
    
 0.559
AGB16621.1
PFAM: Permease family.
 
 
 0.501
AGB16533.1
Heme/copper-type cytochrome/quinol oxidase, subunit 1; PFAM: Cytochrome c oxidase subunit III; Cytochrome C and Quinol oxidase polypeptide I; Belongs to the heme-copper respiratory oxidase family.
 
     0.442
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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