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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB15142.1Dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein; PFAM: short chain dehydrogenase. (267 aa)    
Predicted Functional Partners:
AGB15428.1
NADH:ubiquinone oxidoreductase 49 kD subunit 7; PFAM: Respiratory-chain NADH dehydrogenase, 30 Kd subunit; Respiratory-chain NADH dehydrogenase, 49 Kd subunit.
   
 
 0.917
AGB15143.1
Mismatch repair ATPase (MutS family); This protein is involved in the repair of mismatches in DNA.
 
 
   0.679
AGB15831.1
Beta-galactosidase/beta-glucuronidase; PFAM: domain; Glycosyl hydrolases family 2, sugar binding domain.
 
  
 0.667
AGB14752.1
Arylsulfatase A family protein; PFAM: Sulfatase.
  
 
 0.572
AGB15141.1
L-asparaginase/GlutRNAGln amidotransferase subunit D; PFAM: Asparaginase.
     
 0.569
AGB17426.1
DNA repair exonuclease; PFAM: Calcineurin-like phosphoesterase.
 
 
 
 0.528
AGB15575.1
PFAM: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD.
   
 
 0.524
AGB14757.1
Arylsulfatase A family protein; PFAM: Sulfatase.
   
 
 0.514
AGB15081.1
Arylsulfatase A family protein; PFAM: Sulfatase.
   
 
 0.514
AGB15571.1
Arylsulfatase A family protein; PFAM: Sulfatase.
   
 
 0.514
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.