Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AGB15209.1PFAM: Universal stress protein family. (122 aa)    
Predicted Functional Partners:
AGB15208.1
PFAM: Acetyltransferase (GNAT) family.
 
     0.823
AGB16787.1
Putative phosphatase; PFAM: haloacid dehalogenase-like hydrolase.
  
    0.560
AGB15205.1
Putative DHD superfamily phosphohydrolase.
  
     0.551
AGB15381.1
Hypothetical protein.
  
     0.550
AGB17339.1
DEAD_2 domain-containing protein; PFAM: DEAD_2.
  
     0.515
AGB17657.1
Thioredoxin-like protein; PFAM: NifU-like domain.
 
     0.479
AGB15210.1
Hypothetical protein.
       0.476
AGB17472.1
PFAM: HTH DNA binding domain.
  
     0.450
AGB15350.1
PFAM: Acetyltransferase (GNAT) family.
  
     0.444
AGB16877.1
Putative transcription factor, MBF1 like protein.
  
     0.444
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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