STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB15219.1PFAM: BCCT family transporter; TIGRFAM: choline/carnitine/betaine transport. (544 aa)    
Predicted Functional Partners:
AGB15218.1
Hypothetical protein.
       0.563
AGB16803.1
PFAM: Sodium:solute symporter family; TIGRFAM: sodium/proline symporter; transporter, SSS family; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
  
 0.529
AGB15428.1
NADH:ubiquinone oxidoreductase 49 kD subunit 7; PFAM: Respiratory-chain NADH dehydrogenase, 30 Kd subunit; Respiratory-chain NADH dehydrogenase, 49 Kd subunit.
       0.515
AGB15498.1
PFAM: Sodium:solute symporter family; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
  
 0.460
AGB15094.1
Choline dehydrogenase-like flavoprotein; PFAM: GMC oxidoreductase.
  
  
 0.427
AGB17248.1
Choline dehydrogenase-like flavoprotein; PFAM: GMC oxidoreductase.
  
  
 0.427
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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