Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGB15226.1Hypothetical protein. (237 aa)    
Predicted Functional Partners:
AGB15925.1
Putative membrane protein; PFAM: VIT family; TIGRFAM: TIGR00267 family protein.
  
     0.583
AGB17403.1
Site-specific recombinase XerD; PFAM: Phage integrase, N-terminal SAM-like domain.
  
     0.570
AGB15225.1
Hypothetical protein.
       0.514
AGB14982.1
ABC-type metal ion transport system, periplasmic component/surface adhesin; PFAM: Periplasmic solute binding protein family.
  
     0.479
AGB17560.1
Hypothetical protein.
  
     0.465
AGB17447.1
Hypothetical protein.
  
     0.464
AGB17123.1
Uncharacterized protein, possibly involved in glyoxylate utilization; PFAM: Cupin domain.
  
     0.458
AGB16981.1
ABC-type transport system, involved in lipoprotein release, permease component; PFAM: Predicted permease.
  
     0.457
AGB15504.1
PFAM: Acetyltransferase (GNAT) family.
  
     0.456
AGB15007.1
Putative permease; PFAM: YHS domain; Predicted permease.
  
     0.450
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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