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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB15248.1Membrane protein involved in the export of O-antigen and teichoic acid; PFAM: Polysaccharide biosynthesis protein. (490 aa)    
Predicted Functional Partners:
AGB15651.1
Nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; UDP-glucose/GDP-mannose dehydrogenase family, central domain; UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; TIGRFAM: nucleotide sugar dehydrogenase.
 
  
 0.719
AGB15247.1
Putative xylanase/chitin deacetylase; PFAM: Polysaccharide deacetylase.
 
     0.610
AGB15263.1
Glycosyltransferase; PFAM: Glycosyl transferases group 1.
 
  
 0.523
AGB16219.1
Glycosyltransferase; PFAM: Glycosyl transferases group 1.
 
  
 0.509
AGB15244.1
PFAM: UDP-N-acetylglucosamine 2-epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase.
  
  
 0.478
AGB15628.1
PFAM: UDP-N-acetylglucosamine 2-epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase.
  
  
 0.478
AGB14874.1
Glycosyltransferase; PFAM: Glycosyl transferases group 1.
 
  
 0.474
AGB16227.1
Glycosyltransferase; PFAM: Glycosyl transferases group 1.
 
  
 0.452
AGB16913.1
Glycosyltransferase; PFAM: Glycosyl transferases group 1.
 
  
 0.424
AGB17278.1
Putative ATP-grasp enzyme; PFAM: Carbamoyl-phosphate synthase L chain, ATP binding domain.
 
     0.419
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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