Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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[Homology]
Score
AGB15294.1PFAM: Transcriptional regulator PadR-like family. (100 aa)    
Predicted Functional Partners:
AGB15293.1
Hypothetical protein.
       0.799
AGB15295.1
Molybdopterin biosynthesis enzyme; PFAM: Probable molybdopterin binding domain.
  
    0.623
AGB15292.1
ABC-type multidrug transport system, ATPase component; PFAM: ABC transporter.
     
 0.616
AGB15296.1
PFAM: 5-formyltetrahydrofolate cyclo-ligase family.
       0.551
AGB16106.1
birA, biotin-(acetyl-CoA-carboxylase) ligase; PFAM: HTH domain; Biotin protein ligase C terminal domain; Biotin/lipoate A/B protein ligase family; TIGRFAM: birA, biotin-[acetyl-CoA-carboxylase] ligase region.
  
  
 0.532
AGB15291.1
Hypothetical protein.
       0.510
AGB14805.1
TPR repeat-containing protein; PFAM: Tetratricopeptide repeat.
 
  
 0.431
AGB17007.1
PFAM: Tetratricopeptide repeat.
 
  
 0.402
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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