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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB15306.1PFAM: PUA domain; Queuine tRNA-ribosyltransferase; TIGRFAM: uncharacterized domain 2. (589 aa)    
Predicted Functional Partners:
AGB15829.1
Putative coiled-coil protein.
 
   
 0.791
AGB17337.1
NMD protein affecting ribosome stability and mRNA decay; PFAM: NMD3 family.
  
     0.734
AGB15332.1
TIGRFAM: TIGR01210 family protein.
 
     0.725
AGB16625.1
Putative transcriptional regulator; PFAM: Helix-turn-helix.
  
     0.705
AGB16180.1
Single-stranded DNA-binding protein.
  
     0.700
AGB15090.1
Putative Zn-finger protein.
  
     0.696
AGB16689.1
PFAM: Uncharacterized protein conserved in archaea (DUF2240).
  
     0.694
AGB17135.1
Hypothetical protein.
  
     0.682
AGB17134.1
Single-stranded DNA-binding protein.
  
     0.681
AGB17171.1
Putative membrane protein; PFAM: Domain of unknown function (DUF373).
  
     0.678
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.