STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB15319.1Hypothetical protein. (119 aa)    
Predicted Functional Partners:
AGB15318.1
DNA polymerase elongation subunit (family B); PFAM: DNA polymerase family B.
 
   
 0.933
AGB15320.1
Hypothetical protein.
       0.782
AGB17390.1
DNA polymerase elongation subunit (family B); PFAM: DNA polymerase family B.
 
   
 0.694
AGB17556.1
PFAM: HTH DNA binding domain.
  
     0.617
AGB15322.1
Orc1/cdc6 family replication initiation protein; Involved in regulation of DNA replication.
 
     0.588
AGB16141.1
PFAM: HTH DNA binding domain.
  
     0.571
AGB15321.1
Hypothetical protein.
       0.559
AGB15492.1
PFAM: PAP2 superfamily.
  
     0.523
AGB17219.1
PFAM: HTH DNA binding domain.
  
     0.517
AGB15716.1
PFAM: DoxX.
  
     0.498
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.