STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AGB15368.1Phytoene dehydrogenase-like oxidoreductase; PFAM: Flavin containing amine oxidoreductase. (442 aa)    
Predicted Functional Partners:
AGB15815.1
Phytoene/squalene synthetase; PFAM: Squalene/phytoene synthase.
 
  
 0.847
AGB15365.1
Threonine synthase; PFAM: Pyridoxal-phosphate dependent enzyme; TIGRFAM: threonine synthase.
  
  
 0.750
AGB15858.1
Phytoene/squalene synthetase; PFAM: Squalene/phytoene synthase.
 
  
 0.692
AGB15366.1
acetyl-CoA acetyltransferase.
  
  
 0.552
AGB15813.1
4-hydroxybenzoate polyprenyltransferase-like prenyltransferase; PFAM: UbiA prenyltransferase family.
 
  
 0.540
AGB15367.1
Putative nucleic-acid-binding protein containing a Zn-ribbon; PFAM: Rubredoxin-like zinc ribbon domain (DUF35_N); DUF35 OB-fold domain.
       0.528
AGB15812.1
PFAM: Protein of unknown function (DUF422); TIGRFAM: carotene biosynthesis associated membrane protein.
 
   
 0.523
AGB17511.1
Protoporphyrinogen oxidase; PFAM: Flavin containing amine oxidoreductase; TIGRFAM: protoporphyrinogen oxidase.
  
  
 0.494
AGB15549.1
4-hydroxybenzoate polyprenyltransferase-like prenyltransferase; Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.
 
  
 0.484
AGB15860.1
Flavin-dependent dehydrogenase; PFAM: Lycopene cyclase protein.
 
  
 0.479
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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