Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AGB15417.1ABC-type multidrug transport system, ATPase component; PFAM: ABC transporter. (360 aa)    
Predicted Functional Partners:
AGB15416.1
Hypothetical protein.
 
  
 0.924
AGB17610.1
Hypothetical protein.
 
  
 0.797
AGB17351.1
PFAM: Transcriptional regulator PadR-like family.
  
    0.757
AGB17355.1
Subtilisin-like serine protease; PFAM: Subtilase family; Belongs to the peptidase S8 family.
 
 
 0.650
AGB15171.1
Na+-driven multidrug efflux pump; PFAM: MatE.
  
    0.572
AGB15328.1
PFAM: MatE; TIGRFAM: putative efflux protein, MATE family.
  
    0.572
AGB15501.1
PFAM: MatE; TIGRFAM: putative efflux protein, MATE family.
  
    0.572
AGB15720.1
PFAM: MatE; TIGRFAM: putative efflux protein, MATE family; manually curated.
  
    0.572
rpl2
Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.
  
   0.547
AGB15418.1
Putative transcriptional regulator containing CBS domains; PFAM: CBS domain; ParB-like nuclease domain.
  
    0.543
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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