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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB15448.1PFAM: PBS lyase HEAT-like repeat. (476 aa)    
Predicted Functional Partners:
eif5a
Translation initiation factor eIF-5A; Functions by promoting the formation of the first peptide bond; Belongs to the eIF-5A family.
  
 0.956
AGB15449.1
Phosphatidylserine synthase; PFAM: CDP-alcohol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
 
     0.695
AGB16090.1
PFAM: Iron-sulphur cluster biosynthesis; TIGRFAM: Iron-sulfur cluster assembly accessory protein.
    
 
 0.649
AGB15450.1
Plastocyanin; PFAM: Copper binding proteins, plastocyanin/azurin family.
 
     0.627
AGB17339.1
DEAD_2 domain-containing protein; PFAM: DEAD_2.
  
    0.621
rps8e
PFAM: Ribosomal protein S8e; TIGRFAM: ribosomal protein S8.e.
   
    0.609
AGB14743.1
Putative nucleic acid-binding protein with PIN domain and Zn ribbon.
  
    0.607
AGB17310.1
PFAM: GTPase of unknown function; TIGRFAM: small GTP-binding protein domain.
   
    0.604
AGB15427.1
NADH:ubiquinone oxidoreductase subunit 1 (chain H); PFAM: NADH dehydrogenase.
   
    0.597
AGB14987.1
PFAM: Tetratricopeptide repeat.
 
   0.596
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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