STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB15495.1PFAM: Protein of unknown function (DUF2797). (254 aa)    
Predicted Functional Partners:
AGB15494.1
Hypothetical protein.
       0.780
AGB15911.1
Archaeal flagella assembly protein J; PFAM: Bacterial type II secretion system protein F domain.
  
     0.601
AGB14837.1
PFAM: HTH DNA binding domain.
  
     0.591
AGB15496.1
Hypothetical protein.
       0.584
AGB16318.1
PFAM: Protein of unknown function (DUF447).
  
     0.573
AGB17456.1
PFAM: HTH DNA binding domain.
  
     0.569
AGB17709.1
Leader peptidase family protein; PFAM: Archaeal Peptidase A24 C-terminus Type II; Type IV leader peptidase family.
  
     0.562
AGB15847.1
Putative RNA-binding protein, contains TRAM domain; PFAM: TRAM domain.
  
     0.522
AGB17242.1
PFAM: NAD dependent epimerase/dehydratase family.
 
     0.487
rnp3
RNase P/RNase MRP subunit p30; Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends; Belongs to the eukaryotic/archaeal RNase P protein component 3 family.
  
     0.457
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.