STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB15504.1PFAM: Acetyltransferase (GNAT) family. (454 aa)    
Predicted Functional Partners:
AGB16593.1
PFAM: FG-GAP repeat.
  
     0.604
AGB15691.1
PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle.
  
     0.518
AGB15506.1
PFAM: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain.
  
    0.460
AGB15226.1
Hypothetical protein.
  
     0.456
AGB15505.1
PFAM: Amino acid permease.
       0.445
AGB17455.1
PFAM: HTH DNA binding domain.
  
     0.436
AGB17489.1
Hypothetical protein.
  
     0.429
AGB17219.1
PFAM: HTH DNA binding domain.
  
     0.420
AGB15183.1
PFAM: Peptidase S24-like; TIGRFAM: signal peptidase I, archaeal type.
 
     0.409
srp19
Signal recognition particle 19 kDa protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds directly to 7S RNA and mediates binding of the 54 kDa subunit of the SRP.
  
   
 0.404
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.