Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AGB15505.1PFAM: Amino acid permease. (444 aa)    
Predicted Functional Partners:
AGB15506.1
PFAM: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain.
       0.773
AGB14706.1
Ankyrin repeat-containing protein; PFAM: Ankyrin repeat.
 
 0.565
AGB16489.1
PFAM: Protein kinase domain; FHA domain.
  
 
 0.558
AGB14805.1
TPR repeat-containing protein; PFAM: Tetratricopeptide repeat.
  
 
 0.557
AGB15941.1
PFAM: Sodium:dicarboxylate symporter family.
 
 
 0.521
AGB16491.1
PFAM: Protein kinase domain; FHA domain.
  
 
 0.521
AGB15504.1
PFAM: Acetyltransferase (GNAT) family.
       0.445
AGB14659.1
PFAM: GTPase of unknown function; TIGRFAM: small GTP-binding protein domain.
   
 
 0.425
AGB17204.1
PFAM: Multicopper oxidase.
 
  
 0.416
AGB15804.1
PFAM: Multicopper oxidase.
 
  
 0.415
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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