Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AGB15535.1PFAM: Carboxymuconolactone decarboxylase family; TIGRFAM: alkylhydroperoxidase AhpD family core domain. (136 aa)    
Predicted Functional Partners:
AGB16132.1
Hypothetical protein; PFAM: MTH865-like family.
  
    0.631
AGB15534.1
PFAM: Protein of unknown function (DUF1059).
       0.588
AGB16666.1
Dienelactone hydrolase-like enzyme; PFAM: BAAT / Acyl-CoA thioester hydrolase C terminal.
 
    0.578
AGB16980.1
ABC-type transport system, involved in lipoprotein release, permease component; PFAM: Predicted permease.
 
     0.544
AGB15278.1
PFAM: Lyase; Adenylosuccinate lyase C-terminal; TIGRFAM: adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
  
  
 0.507
AGB16981.1
ABC-type transport system, involved in lipoprotein release, permease component; PFAM: Predicted permease.
 
     0.494
AGB16106.1
birA, biotin-(acetyl-CoA-carboxylase) ligase; PFAM: HTH domain; Biotin protein ligase C terminal domain; Biotin/lipoate A/B protein ligase family; TIGRFAM: birA, biotin-[acetyl-CoA-carboxylase] ligase region.
       0.486
AGB15536.1
Hypothetical protein.
       0.470
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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