Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGB15550.1RecA-superfamily ATPase possibly involved in signal transduction. (207 aa)    
Predicted Functional Partners:
AGB15381.1
Hypothetical protein.
  
     0.665
AGB16777.1
Putative transcriptional regulator; PFAM: Bacterial regulatory protein, arsR family.
  
     0.653
AGB15890.1
Putative ATPase; PFAM: Domain of unknown function DUF87.
  
     0.629
AGB16607.1
RecA-superfamily ATPase possibly involved in signal transduction.
 
     0.620
AGB15551.1
Putative CoA-binding protein; PFAM: CoA binding domain.
       0.590
AGB16521.1
PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E.
  
     0.577
AGB15386.1
Archaeal flagella assembly protein J; PFAM: Bacterial type II secretion system protein F domain.
  
     0.570
AGB15038.1
Hypothetical protein.
  
     0.565
AGB14742.1
Hypothetical protein; PFAM: PRC-barrel domain.
  
     0.551
AGB16040.1
PFAM: Membrane protein of unknown function DUF63.
  
     0.536
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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