STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGB15578.1PFAM: HTH DNA binding domain. (216 aa)    
Predicted Functional Partners:
AGB15580.1
Formimidoylglutamase; PFAM: Arginase family; TIGRFAM: formimidoylglutamase; Belongs to the arginase family.
 
     0.627
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
       0.602
hutI
Imidazolonepropionase; PFAM: Amidohydrolase family; TIGRFAM: imidazolonepropionase; Belongs to the metallo-dependent hydrolases superfamily. HutI family.
       0.601
hutH
PFAM: Phenylalanine and histidine ammonia-lyase; TIGRFAM: histidine ammonia-lyase.
       0.576
AGB16300.1
PFAM: Acetyltransferase (GNAT) family.
  
     0.561
AGB17404.1
PFAM: Bacterial protein of unknown function (DUF894).
  
     0.539
AGB15267.1
Hypothetical protein.
  
     0.528
AGB15245.1
Hypothetical protein.
  
     0.524
AGB16358.1
PFAM: HTH DNA binding domain.
  
     0.518
AGB17321.1
PFAM: Arylsulfotransferase (ASST).
  
     0.511
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.