STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB15662.1NosL; PFAM: NosL. (185 aa)    
Predicted Functional Partners:
AGB16243.1
PFAM: Protein of unknown function (DUF2910).
  
     0.638
AGB15663.1
DMT(drug/metabolite transporter) superfamily permease; PFAM: EamA-like transporter family.
       0.629
AGB16220.1
PFAM: Polysaccharide deacetylase.
  
     0.622
AGB16790.1
PFAM: E3 Ubiquitin ligase.
  
     0.556
AGB16732.1
Outer membrane lipoprotein-sorting protein.
  
     0.553
AGB17085.1
Putative xylanase/chitin deacetylase; PFAM: Polysaccharide deacetylase.
  
     0.541
AGB17355.1
Subtilisin-like serine protease; PFAM: Subtilase family; Belongs to the peptidase S8 family.
 
  
 0.533
AGB15661.1
Transcriptional regulator; PFAM: HTH domain; AsnC family.
  
    0.522
AGB15255.1
PFAM: Polysaccharide deacetylase.
  
     0.514
AGB15557.1
Hypothetical protein.
 
  
 0.465
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.