Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AGB15747.1Hypothetical protein. (116 aa)    
Predicted Functional Partners:
AGB15746.1
PFAM: Protein of unknown function (DUF833).
       0.830
AGB16292.1
PFAM: Uncharacterized protein conserved in archaea (DUF2150).
  
     0.727
AGB15848.1
Putative Fe-S oxidoreductase; PFAM: Uncharacterised protein family (UPF0153).
  
     0.719
AGB16480.1
Putative acyltransferase; PFAM: Protein of unknown function, DUF583.
  
     0.713
AGB15164.1
PFAM: Protein of unknown function (DUF460).
  
     0.710
tfe
Transcription initiation factor IIE, alpha subunit; Transcription factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Facilitates transcription initiation by enhancing TATA-box recognition by TATA-box-binding protein (Tbp), and transcription factor B (Tfb) and RNA polymerase recruitment. Not absolutely required for transcription in vitro, but particularly important in cases where Tbp or Tfb function is not optimal. It dynamically alters the nucleic acid-binding properties of RNA polymerases by stabilizing the initiation complex and destabilizing [...]
  
   
 0.710
AGB15118.1
PFAM: Protein of unknown function (DUF552).
  
     0.707
AGB15475.1
Methyltransferase family protein; PFAM: Methyltransferase domain.
  
     0.683
AGB14661.1
PFAM: Zn-ribbon containing protein (DUF2072).
  
     0.677
AGB16189.1
PFAM: Chorismate mutase type II; TIGRFAM: chorismate mutase, archaeal type.
 
     0.674
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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