Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
pfdBPrefoldin, beta subunit, archaeal; Molecular chaperone capable of stabilizing a range of proteins. Seems to fulfill an ATP-independent, HSP70-like function in archaeal de novo protein folding. (130 aa)    
Predicted Functional Partners:
pfdA
Prefoldin alpha subunit/subunit 5; Molecular chaperone capable of stabilizing a range of proteins. Seems to fulfill an ATP-independent, HSP70-like function in archaeal de novo protein folding.
  
 0.982
rpoP
DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger); DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoP/eukaryotic RPC10 RNA polymerase subunit family.
  
  
 0.960
rpl37ae
Ribosomal protein L37AE/L43A; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL43 family.
 
  
 0.929
AGB15785.1
Hypothetical protein.
       0.911
AGB15783.1
Hypothetical protein; PFAM: Transcription factor Pcc1.
  
    0.818
AGB17205.1
PFAM: Formate/nitrite transporter; Universal stress protein family.
   
 
 0.780
AGB14765.1
PFAM: Double-stranded DNA-binding domain; Belongs to the PDCD5 family.
 
   0.774
AGB16241.1
PFAM: Formate/nitrite transporter.
    
 
 0.769
ef1b
Translation elongation factor aEF-1 beta; Promotes the exchange of GDP for GTP in EF-1-alpha/GDP, thus allowing the regeneration of EF-1-alpha/GTP that could then be used to form the ternary complex EF-1-alpha/GTP/AAtRNA.
  
    0.755
rpl21e
PFAM: Ribosomal protein L21e; Belongs to the eukaryotic ribosomal protein eL21 family.
  
  
 0.754
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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