Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AGB15801.1PFAM: Amino acid permease. (474 aa)    
Predicted Functional Partners:
AGB15800.1
Universal stress protein UspA-like protein.
       0.699
AGB15281.1
PFAM: Universal stress protein family.
    0.630
AGB14805.1
TPR repeat-containing protein; PFAM: Tetratricopeptide repeat.
 
 
 0.614
AGB16489.1
PFAM: Protein kinase domain; FHA domain.
  
 
 0.602
AGB16491.1
PFAM: Protein kinase domain; FHA domain.
  
 
 0.583
AGB14706.1
Ankyrin repeat-containing protein; PFAM: Ankyrin repeat.
 
 0.573
AGB15802.1
Hypothetical protein.
       0.519
AGB15941.1
PFAM: Sodium:dicarboxylate symporter family.
 
 
 0.437
AGB15803.1
Mn-dependent transcriptional regulator; PFAM: Iron dependent repressor, metal binding and dimerisation domain; Iron dependent repressor, N-terminal DNA binding domain.
       0.428
AGB14659.1
PFAM: GTPase of unknown function; TIGRFAM: small GTP-binding protein domain.
   
 
 0.425
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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