Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AGB15812.1PFAM: Protein of unknown function (DUF422); TIGRFAM: carotene biosynthesis associated membrane protein. (279 aa)    
Predicted Functional Partners:
AGB15814.1
Phytoene desaturase; PFAM: Flavin containing amine oxidoreductase; TIGRFAM: phytoene desaturase.
 
  
 0.997
AGB15813.1
4-hydroxybenzoate polyprenyltransferase-like prenyltransferase; PFAM: UbiA prenyltransferase family.
 
   
 0.974
AGB15815.1
Phytoene/squalene synthetase; PFAM: Squalene/phytoene synthase.
 
   
 0.963
AGB15816.1
PAS domain S-box; PFAM: HTH DNA binding domain; PAS fold; TIGRFAM: PAS domain S-box.
 
     0.618
carB
Carbamoylphosphate synthase large subunit; PFAM: Carbamoyl-phosphate synthase L chain, ATP binding domain; Carbamoyl-phosphate synthetase large chain, oligomerisation domain; Carbamoyl-phosphate synthase L chain, N-terminal domain; TIGRFAM: carbamoyl-phosphate synthase, large subunit; Belongs to the CarB family.
      
 0.575
AGB15287.1
Isopentenyldiphosphate isomerase; PFAM: NUDIX domain; TIGRFAM: isopentenyl-diphosphate delta-isomerase, type 1.
     
 0.532
AGB15368.1
Phytoene dehydrogenase-like oxidoreductase; PFAM: Flavin containing amine oxidoreductase.
 
   
 0.523
AGB15858.1
Phytoene/squalene synthetase; PFAM: Squalene/phytoene synthase.
 
   
 0.521
AGB16340.1
Putative archaeal kinase; Catalyzes the phosphorylation of isopentenyl phosphate (IP) to isopentenyl diphosphate (IPP). Functions in an alternate mevalonate (MVA) pathway leading to IPP, a key precursor for the biosynthesis of isoprenoid compounds such as archaeal membrane lipids.
  
   
 0.421
AGB16703.1
Hypothetical protein; Manually curated.
       0.416
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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