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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
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[Homology]
Score
AGB15814.1Phytoene desaturase; PFAM: Flavin containing amine oxidoreductase; TIGRFAM: phytoene desaturase. (503 aa)    
Predicted Functional Partners:
AGB15813.1
4-hydroxybenzoate polyprenyltransferase-like prenyltransferase; PFAM: UbiA prenyltransferase family.
 
 
 0.998
AGB15815.1
Phytoene/squalene synthetase; PFAM: Squalene/phytoene synthase.
  
 0.998
AGB15812.1
PFAM: Protein of unknown function (DUF422); TIGRFAM: carotene biosynthesis associated membrane protein.
 
  
 0.997
AGB15858.1
Phytoene/squalene synthetase; PFAM: Squalene/phytoene synthase.
 
  
 0.832
AGB15287.1
Isopentenyldiphosphate isomerase; PFAM: NUDIX domain; TIGRFAM: isopentenyl-diphosphate delta-isomerase, type 1.
 
  
 0.648
AGB15816.1
PAS domain S-box; PFAM: HTH DNA binding domain; PAS fold; TIGRFAM: PAS domain S-box.
 
    0.608
AGB15549.1
4-hydroxybenzoate polyprenyltransferase-like prenyltransferase; Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.
 
  
 0.591
AGB16817.1
PFAM: Bacteriorhodopsin-like protein.
  
  
 0.575
AGB14714.1
Short-chain alcohol dehydrogenase; PFAM: short chain dehydrogenase.
     
 0.510
AGB17451.1
PFAM: FAD binding domain of DNA photolyase; DNA photolyase.
 
  
 0.502
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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