Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AGB15816.1PAS domain S-box; PFAM: HTH DNA binding domain; PAS fold; TIGRFAM: PAS domain S-box. (674 aa)    
Predicted Functional Partners:
AGB15759.1
PAS domain S-box; PFAM: PAS fold; TIGRFAM: PAS domain S-box.
 
   
 0.748
AGB15815.1
Phytoene/squalene synthetase; PFAM: Squalene/phytoene synthase.
 
    0.649
AGB15812.1
PFAM: Protein of unknown function (DUF422); TIGRFAM: carotene biosynthesis associated membrane protein.
 
     0.618
AGB15814.1
Phytoene desaturase; PFAM: Flavin containing amine oxidoreductase; TIGRFAM: phytoene desaturase.
 
    0.608
AGB15813.1
4-hydroxybenzoate polyprenyltransferase-like prenyltransferase; PFAM: UbiA prenyltransferase family.
 
     0.561
AGB15817.1
PFAM: Multicopper oxidase.
       0.514
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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