Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
AGB15911.1Archaeal flagella assembly protein J; PFAM: Bacterial type II secretion system protein F domain. (688 aa)    
Predicted Functional Partners:
AGB15912.1
ATPase, type IV secretory pathway VirB11 component like protein; PFAM: Type II/IV secretion system protein.
 
  
 0.982
AGB15907.1
Hypothetical protein.
       0.955
AGB15909.1
Hypothetical protein.
       0.955
AGB15910.1
Hypothetical protein.
       0.955
AGB15908.1
Hypothetical protein.
       0.954
AGB15906.1
Hypothetical protein.
       0.911
AGB15913.1
Hypothetical protein.
       0.773
AGB17709.1
Leader peptidase family protein; PFAM: Archaeal Peptidase A24 C-terminus Type II; Type IV leader peptidase family.
 
   
 0.766
AGB16318.1
PFAM: Protein of unknown function (DUF447).
  
     0.723
AGB14974.1
PFAM: Uncharacterised protein family (UPF0146); Belongs to the UPF0146 family.
  
     0.719
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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