Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AGB15924.1alpha-L-glutamate ligase, RimK family; PFAM: RimK-like ATP-grasp domain; Protein of unknown function (DUF785); TIGRFAM: alpha-L-glutamate ligases, RimK family. (445 aa)    
Predicted Functional Partners:
AGB15041.1
TIGRFAM: lysine biosynthesis protein LysW.
 
 
 
 0.901
AGB15921.1
Putative deacylase; PFAM: Succinylglutamate desuccinylase / Aspartoacylase family.
 
     0.847
AGB15086.1
Glutathione synthase/ribosomal protein S6 modification enzyme (glutaminyl transferase); PFAM: RimK-like ATP-grasp domain; TIGRFAM: alpha-L-glutamate ligases, RimK family.
  
     0.743
AGB15572.1
Putative deacylase; PFAM: Succinylglutamate desuccinylase / Aspartoacylase family.
 
     0.581
lysK
N-acetyl-ornithine/N-acetyl-lysine deacetylase; Catalyzes the release of L-lysine from [LysW]-gamma-L-lysine and the release of L-ornithine from [LysW]-L-ornithine.
 
  
 0.558
AGB17146.1
Putative deacylase; PFAM: Succinylglutamate desuccinylase / Aspartoacylase family.
 
     0.514
AGB15920.1
Succinate dehydrogenase, cytochrome b556 subunit; PFAM: Succinate dehydrogenase/Fumarate reductase transmembrane subunit; TIGRFAM: succinate dehydrogenase, cytochrome b556 subunit.
  
    0.495
AGB15919.1
Succinate dehydrogenase, hydrophobic anchor subunit; PFAM: Succinate dehydrogenase/Fumarate reductase transmembrane subunit.
       0.474
AGB15923.1
Membrane protein involved in the export of O-antigen and teichoic acid; PFAM: Polysaccharide biosynthesis protein.
       0.470
AGB15918.1
TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein.
       0.465
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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