Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
AGB15926.1Hypothetical protein; PFAM: Uncharacterized ArCR, COG1888. (97 aa)    
Predicted Functional Partners:
AGB15925.1
Putative membrane protein; PFAM: VIT family; TIGRFAM: TIGR00267 family protein.
 
     0.959
AGB15927.1
Hypothetical protein.
       0.491
AGB17495.1
PFAM: Sugar-specific transcriptional regulator TrmB.
  
     0.475
rnp3
RNase P/RNase MRP subunit p30; Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends; Belongs to the eukaryotic/archaeal RNase P protein component 3 family.
 
    0.454
AGB16079.1
Putative exosome subunit; PFAM: Protein of unknown function DUF54.
  
     0.410
AGB15847.1
Putative RNA-binding protein, contains TRAM domain; PFAM: TRAM domain.
  
     0.406
AGB16295.1
PFAM: Protein of unknown function DUF88; TIGRFAM: TIGR00288 family protein.
  
     0.400
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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