Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AGB15975.1PFAM: Protein of unknown function (DUF1119). (361 aa)    
Predicted Functional Partners:
AGB15974.1
RNA-binding protein involved in rRNA processing; PFAM: Gar1/Naf1 RNA binding region.
       0.782
srp19
Signal recognition particle 19 kDa protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds directly to 7S RNA and mediates binding of the 54 kDa subunit of the SRP.
       0.774
AGB14657.1
PFAM: Peptidase S24-like.
  
     0.752
AGB16014.1
Hypothetical protein; PFAM: PRC-barrel domain.
  
     0.748
AGB15118.1
PFAM: Protein of unknown function (DUF552).
  
     0.741
AGB14742.1
Hypothetical protein; PFAM: PRC-barrel domain.
  
     0.732
AGB17135.1
Hypothetical protein.
  
     0.732
AGB17134.1
Single-stranded DNA-binding protein.
  
     0.717
AGB15608.1
Putative membrane protein, required for N-linked glycosylation; PFAM: Oligosaccharyl transferase STT3 subunit.
  
     0.716
AGB15370.1
Putative membrane protein; PFAM: Transmembrane exosortase (Exosortase_EpsH).
  
     0.706
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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