Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGB16014.1Hypothetical protein; PFAM: PRC-barrel domain. (96 aa)    
Predicted Functional Partners:
AGB15118.1
PFAM: Protein of unknown function (DUF552).
  
  
 0.801
AGB14742.1
Hypothetical protein; PFAM: PRC-barrel domain.
  
   
 0.766
AGB15975.1
PFAM: Protein of unknown function (DUF1119).
  
     0.748
AGB14657.1
PFAM: Peptidase S24-like.
  
     0.747
AGB15380.1
Hypothetical protein.
  
     0.735
AGB17134.1
Single-stranded DNA-binding protein.
  
     0.731
AGB17135.1
Hypothetical protein.
  
     0.731
AGB15608.1
Putative membrane protein, required for N-linked glycosylation; PFAM: Oligosaccharyl transferase STT3 subunit.
  
     0.703
AGB16689.1
PFAM: Uncharacterized protein conserved in archaea (DUF2240).
  
     0.695
AGB15829.1
Putative coiled-coil protein.
  
     0.694
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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