Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AGB16040.1PFAM: Membrane protein of unknown function DUF63. (374 aa)    
Predicted Functional Partners:
AGB16041.1
PFAM: Inositol monophosphatase family.
       0.815
AGB14661.1
PFAM: Zn-ribbon containing protein (DUF2072).
  
     0.717
AGB15475.1
Methyltransferase family protein; PFAM: Methyltransferase domain.
  
     0.715
AGB16364.1
Hypothetical protein.
 
     0.711
AGB17168.1
Hypothetical protein.
  
     0.708
AGB15370.1
Putative membrane protein; PFAM: Transmembrane exosortase (Exosortase_EpsH).
  
     0.700
AGB15205.1
Putative DHD superfamily phosphohydrolase.
  
     0.699
AGB16473.1
PFAM: Uncharacterised protein family (UPF0179); Belongs to the UPF0179 family.
 
   
 0.674
AGB16662.1
PFAM: Integral membrane protein DUF106.
  
     0.663
AGB17709.1
Leader peptidase family protein; PFAM: Archaeal Peptidase A24 C-terminus Type II; Type IV leader peptidase family.
  
     0.657
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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