Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AGB16078.1PFAM: YcaO-like family; TIGRFAM: uncharacterized domain; bacteriocin biosynthesis docking scaffold, SagD family. (577 aa)    
Predicted Functional Partners:
AGB17614.1
PFAM: Nitroreductase family; TIGRFAM: SagB-type dehydrogenase domain.
 
  
 0.784
AGB14744.1
Putative metal-dependent membrane protease; PFAM: CAAX amino terminal protease family.
 
  
 0.682
AGB16079.1
Putative exosome subunit; PFAM: Protein of unknown function DUF54.
 
     0.650
AGB14897.1
Putative metal-dependent membrane protease; PFAM: CAAX amino terminal protease family.
 
  
 0.645
AGB15868.1
ABC-type multidrug transport system, permease component; PFAM: ABC-2 type transporter.
 
  
 0.645
AGB17615.1
Hypothetical protein; TIGRFAM: bacteriocin biosynthesis cyclodehydratase domain; bacteriocin biosynthesis cyclodehydratase, SagC family.
 
   
 0.609
AGB16855.1
PFAM: CAAX amino terminal protease family.
  
  
 0.580
AGB17233.1
PFAM: CAAX amino terminal protease family.
  
  
 0.580
AGB17484.1
PFAM: CAAX amino terminal protease family.
  
  
 0.580
AGB14808.1
Putative nuclease of the RecB family; PFAM: Protein of unknown function DUF91; Topoisomerase DNA binding C4 zinc finger.
  
     0.546
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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