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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB16141.1PFAM: HTH DNA binding domain. (253 aa)    
Predicted Functional Partners:
AGB17456.1
PFAM: HTH DNA binding domain.
  
     0.655
AGB16140.1
PAS domain S-box; PFAM: HTH DNA binding domain; PAS fold; TIGRFAM: PAS domain S-box.
 
     0.621
AGB17556.1
PFAM: HTH DNA binding domain.
  
     0.613
AGB16193.1
Site-specific recombinase XerD.
  
     0.587
AGB15319.1
Hypothetical protein.
  
     0.571
AGB17709.1
Leader peptidase family protein; PFAM: Archaeal Peptidase A24 C-terminus Type II; Type IV leader peptidase family.
  
     0.549
AGB15126.1
Hypothetical protein.
  
     0.541
AGB14885.1
PFAM: HTH DNA binding domain.
  
     0.540
AGB17219.1
PFAM: HTH DNA binding domain.
  
     0.531
AGB15233.1
Hypothetical protein.
  
     0.530
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.