Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGB16160.1Putative acyl-CoA transferase/carnitine dehydratase; PFAM: CoA-transferase family III. (391 aa)    
Predicted Functional Partners:
AGB16156.1
Acyl dehydratase.
  
 
 0.987
AGB16157.1
PFAM: Methylaspartate ammonia-lyase C-terminus; Methylaspartate ammonia-lyase N-terminus; TIGRFAM: methylaspartate ammonia-lyase.
    
 0.977
glmS-2
Methylaspartate mutase, S subunit; Catalyzes the carbon skeleton rearrangement of L-glutamate to L-threo-3-methylaspartate ((2S,3S)-3-methylaspartate).
     
 0.714
AGB17113.1
PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain.
 
 0.685
glmE
Methylaspartate mutase, E subunit; Catalyzes the carbon skeleton rearrangement of L-glutamate to L-threo-3-methylaspartate ((2S,3S)-3-methylaspartate).
       0.639
AGB16477.1
Flavin-dependent dehydrogenase; PFAM: FAD binding domain.
     
 0.630
AGB16155.1
PFAM: HpcH/HpaI aldolase/citrate lyase family.
  
  
 0.624
AGB17624.1
Ribosomal protein L40E; Belongs to the eukaryotic ribosomal protein eL40 family.
     
  0.565
AGB14900.1
PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain.
 
 
 0.539
AGB16161.1
Hypothetical protein.
       0.530
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
Server load: low (26%) [HD]