Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AGB16167.1Putative exonuclease. (251 aa)    
Predicted Functional Partners:
AGB16170.1
Hypothetical protein.
       0.607
AGB16168.1
Hypothetical protein.
       0.578
AGB16063.1
Helicase family protein with metal-binding cysteine cluster; PFAM: Helicase conserved C-terminal domain; Domain of unknown function (DUF1998); DEAD/DEAH box helicase.
 
    0.563
AGB16397.1
Putative GTPase, probable translation factor; PFAM: GTPase of unknown function; GTPase of unknown function C-terminal; TGS domain.
      
 0.507
AGB17251.1
Hypothetical protein; PFAM: Uncharacterised ACR, COG2135.
       0.470
AGB15430.1
NADH:ubiquinone oxidoreductase subunit 3 (chain A); PFAM: NADH-ubiquinone/plastoquinone oxidoreductase, chain 3.
      
 0.466
AGB17247.1
PFAM: Glycosyl transferase family 2.
       0.466
AGB17291.1
PFAM: 'Cold-shock' DNA-binding domain.
      
 0.464
AGB17601.1
Hypothetical protein.
  
     0.439
AGB15835.1
Exopolyphosphatase-like enzyme; PFAM: DHHA1 domain; DHH family.
  
    0.411
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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