Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AGB16193.1Site-specific recombinase XerD. (373 aa)    
Predicted Functional Partners:
AGB15126.1
Hypothetical protein.
  
     0.712
AGB15233.1
Hypothetical protein.
  
     0.684
AGB14866.1
3-hydroxy-3-methylglutaryl CoA synthase; PFAM: Rubredoxin-like zinc ribbon domain (DUF35_N); DUF35 OB-fold domain.
  
     0.663
AGB16235.1
Hypothetical protein.
  
     0.643
AGB16281.1
Putative domain HDIG-containing protein; PFAM: HD domain; TIGRFAM: uncharacterized domain HDIG.
  
     0.631
AGB16141.1
PFAM: HTH DNA binding domain.
  
     0.587
AGB16222.1
Hypothetical protein.
  
     0.569
AGB16358.1
PFAM: HTH DNA binding domain.
  
     0.567
AGB16790.1
PFAM: E3 Ubiquitin ligase.
  
     0.534
AGB15267.1
Hypothetical protein.
  
     0.522
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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