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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB16220.1PFAM: Polysaccharide deacetylase. (316 aa)    
Predicted Functional Partners:
AGB16243.1
PFAM: Protein of unknown function (DUF2910).
  
     0.643
AGB15662.1
NosL; PFAM: NosL.
  
     0.622
AGB16221.1
Hypothetical protein; PFAM: Type I phosphodiesterase / nucleotide pyrophosphatase.
 
     0.583
AGB16732.1
Outer membrane lipoprotein-sorting protein.
  
     0.574
AGB16790.1
PFAM: E3 Ubiquitin ligase.
  
     0.569
AGB17085.1
Putative xylanase/chitin deacetylase; PFAM: Polysaccharide deacetylase.
  
     0.559
AGB16226.1
Membrane protein involved in the export of O-antigen and teichoic acid; PFAM: Polysaccharide biosynthesis protein.
  
     0.512
AGB16193.1
Site-specific recombinase XerD.
  
     0.465
AGB15923.1
Membrane protein involved in the export of O-antigen and teichoic acid; PFAM: Polysaccharide biosynthesis protein.
  
     0.443
AGB15126.1
Hypothetical protein.
  
     0.438
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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