Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGB16235.1Hypothetical protein. (334 aa)    
Predicted Functional Partners:
AGB16234.1
Hypothetical protein; PFAM: Type I phosphodiesterase / nucleotide pyrophosphatase.
 
     0.870
AGB15245.1
Hypothetical protein.
 
     0.726
AGB16193.1
Site-specific recombinase XerD.
  
     0.643
AGB16508.1
PFAM: Bacterial regulatory protein, arsR family; MarR family.
  
     0.610
AGB17434.1
PFAM: Protein of unknown function (DUF354).
 
     0.585
AGB17278.1
Putative ATP-grasp enzyme; PFAM: Carbamoyl-phosphate synthase L chain, ATP binding domain.
 
     0.584
AGB15496.1
Hypothetical protein.
  
     0.579
AGB16194.1
PFAM: Protein of unknown function (DUF354).
 
     0.578
AGB16358.1
PFAM: HTH DNA binding domain.
  
     0.577
AGB15246.1
Hypothetical protein.
 
     0.547
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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