STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB16251.1Hypothetical protein. (417 aa)    
Predicted Functional Partners:
AGB16250.1
Hypothetical protein.
       0.773
AGB17261.1
PFAM: T4-like virus tail tube protein gp19; TIGRFAM: conserved hypothetical phage tail region protein.
  
     0.754
AGB17265.1
PFAM: T4-like virus tail tube protein gp19; TIGRFAM: conserved hypothetical phage tail region protein.
  
     0.749
AGB17266.1
PFAM: Phage tail sheath protein.
  
     0.749
AGB14786.1
Phage baseplate assembly protein W; PFAM: Gene 25-like lysozyme.
  
     0.748
AGB15066.1
PFAM: ATPase family associated with various cellular activities (AAA).
  
     0.748
AGB14784.1
Hypothetical protein; PFAM: Phage-related baseplate assembly protein.
  
     0.747
AGB14872.1
PFAM: ATPase family associated with various cellular activities (AAA).
  
     0.747
AGB14782.1
LysM domain-containing protein; PFAM: LysM domain.
  
     0.746
AGB14783.1
Phage protein D; PFAM: Phage late control gene D protein (GPD).
  
     0.739
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.