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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB16293.1Putative metal-dependent hydrolase (urease superfamily); PFAM: TatD related DNase. (280 aa)    
Predicted Functional Partners:
AGB17624.1
Ribosomal protein L40E; Belongs to the eukaryotic ribosomal protein eL40 family.
  
     0.734
AGB17337.1
NMD protein affecting ribosome stability and mRNA decay; PFAM: NMD3 family.
 
     0.705
AGB16292.1
PFAM: Uncharacterized protein conserved in archaea (DUF2150).
 
     0.689
AGB15332.1
TIGRFAM: TIGR01210 family protein.
  
     0.671
rpl44e
Ribosomal protein L44E; Binds to the 23S rRNA.
 
     0.666
AGB15306.1
PFAM: PUA domain; Queuine tRNA-ribosyltransferase; TIGRFAM: uncharacterized domain 2.
  
     0.653
AGB16473.1
PFAM: Uncharacterised protein family (UPF0179); Belongs to the UPF0179 family.
  
     0.644
AGB16298.1
Putative transcriptional regulator; PFAM: Helix-turn-helix.
  
     0.626
AGB15829.1
Putative coiled-coil protein.
  
     0.618
AGB16143.1
PFAM: Protein of unknown function (DUF555); Belongs to the UPF0212 family.
  
     0.587
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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