Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
AGB16300.1PFAM: Acetyltransferase (GNAT) family. (199 aa)    
Predicted Functional Partners:
AGB16299.1
PFAM: Predicted membrane-bound metal-dependent hydrolase (DUF457).
       0.906
AGB16298.1
Putative transcriptional regulator; PFAM: Helix-turn-helix.
       0.782
AGB16301.1
Protein-disulfide isomerase; PFAM: DSBA-like thioredoxin domain.
       0.588
AGB17246.1
Hypothetical protein.
  
     0.568
AGB15578.1
PFAM: HTH DNA binding domain.
  
     0.561
AGB17321.1
PFAM: Arylsulfotransferase (ASST).
  
     0.543
rfcL
DNA polymerase III, gamma/tau subunit; Part of the RFC clamp loader complex which loads the PCNA sliding clamp onto DNA; Belongs to the activator 1 small subunits family. RfcL subfamily.
       0.519
AGB17244.1
PFAM: Reversibly glycosylated polypeptide.
  
     0.519
AGB14938.1
Membrane protein involved in the export of O-antigen and teichoic acid; PFAM: Polysaccharide biosynthesis protein.
 
    0.506
AGB17317.1
PFAM: Uncharacterised protein family (UPF0104); TIGRFAM: conserved hypothetical protein.
 
     0.501
Your Current Organism:
Halovivax ruber
NCBI taxonomy Id: 797302
Other names: H. ruber XH-70, Halovivax ruber JCM 13892, Halovivax ruber XH-70, Halovivax ruber str. XH-70, Halovivax ruber strain XH-70
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